I am interested in how the structure of networks form, how function can emerge, and how it is affected by neuromodulation and neurodegeneration. We are currently working on generating a large scale model of the striatum, which is a part of the basal ganglia, a structure important for action selection and reward based learning.
Github - Source code for Retinal Map article, SynD, EvA, etc.
KTH Github - Creation of large scale networks of neurons based on touch detection (partly private).
SynD - Synapse detection in immunofluorescent images.